[BioC] problems with genome files?

Manu Bi manubioc at yahoo.co.uk
Wed Oct 20 17:21:26 CEST 2004


Dear all
 
I am trying to analyse some U133 plus2 generated data but I have some problems and wondered if anyone can help.
My code lines are:
> x <- ReadAffy(myfiles)
> x
 
and I get the message:
 
 Note: You did not specify a download type.  Using a default value of: Win32 
This will be fine for almost all users
 
Error in if ((is.null(deps)) || (length(deps) == 0) || (deps == "")) return(NULL) : 
        missing value where TRUE/FALSE needed
AffyBatch object
size of arrays=1164x1164 features (127026 kb)
cdf=HG-U133_Plus_2 (??? affyids)
number of samples=12
Warning message: 
missing cdf environment ! in: show(structure(list(), exprs = structure(c(177, 17704, 184, 17894,  
Note: You did not specify a download type.  Using a default value of: Win32 
This will be fine for almost all users
 
Error in if ((is.null(deps)) || (length(deps) == 0) || (deps == "")) return(NULL) : 
        missing value where TRUE/FALSE needed

 
could anyone tell me what am I doing wrong?
 
thank you
 
M

		
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