[BioC] Swiss-Prot to gene annotation translation/conversion

[Sean Davis]

Mark,

If the genes are from human, the Human Gene Naming Consortium (HGNC) 
maintains downloadable text files that include cross-references between 
SwissProt and LocusLink (and others).  I haven't used them to know how 
good the annotation is.

Here is the URL of interest:

http://www.gene.ucl.ac.uk/nomenclature/code/ftpaccess.html

Hope this helps.

Sean

On Sep 2, 2004, at 12:58 PM, Kimpel, Mark W wrote:

> I have a list of about 300 Swiss-Prot ID's that I would like to upload
> to several bioinformatics sites for analysis. Unfortunately, these 
> sites
> only recognize gene annotations such as GenBank, LocusLink, or 
> affychip.
> Does a tool exist, even if not in R, that would easily perform a
> conversion of my Swiss-Prot ID's? If not, what would it take to
> construct such a tool using the annotate or similar package?
>
> Thanks,
>
> Mark
>
> Mark W. Kimpel MD
>
>
> Department of Psychiatry
> Indiana University School of Medicine
> Biotechnology, Research, & Training Center
> 1345 W. 16th Street
> Indianapolis, IN  46202
>
>
>
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>
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