[BioC] SV:Package for ArrayWoRx output-files
Per Gregersen
Per.Gregersen at agrsci.dk
Tue Sep 21 13:50:37 CEST 2004
For the LIMMA package you should be able to read in the fore- and background data directly from the ArrayWoRx output .res-files using these lines, when you have the output files grouped together in your work directory:
files<-dir(pattern="*\\.res")
RG<-read.maimages(files, columns=list(Rf="S1", Gf="S2", Rb="B1", Gb="B2"))
You need to check the settings in the scanner software regarding which dye goes into which channel.
Per Gregersen
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