[BioC] using getPMID with non-affy data
Robert Gentleman
rgentlem at jimmy.harvard.edu
Tue Sep 28 21:32:00 CEST 2004
On Tue, Sep 28, 2004 at 02:20:57PM -0500, Kimpel, Mark W wrote:
> I would like to use the getPMID function in the package "annotate" but
> am working data that I only have gene ID's for. Is there a way to make
> this work?
You need to have something that maps to something that is known (what
is a gene ID?), if you can get to UniGene or LocusLink etc, then
there are many ways (both in Bioconductor and in many other
resources) to map from those to PubMed. LocusLink is among the more
common. For example, if you are using human genes once you get to
LocusLink IDs you can use the humanLLMappings package to get to PMID
Robert
>
> Mark
>
> Mark W. Kimpel MD
>
> Department of Psychiatry
> Indiana University School of Medicine
> Biotechnology, Research, & Training Center
> 1345 W. 16th Street
> Indianapolis, IN 46202
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
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