[BioC] affy SNP chips

James MacDonald jmacdon at med.umich.edu
Sat Apr 2 03:08:48 CEST 2005

I am seriously considering a package for the Affy SNP chips (A/B calls,
LOH, copy number). However, a current stumbling block is the lack of a
text Xba .cdf file. They have converted both .cdfs to binary format, and
we don't currently have the tools to read them (luckily, I already made
a cdfenv for the Hind chip). If anybody has a text version of the Xba
.cdf I would appreciate getting a copy.



James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
>>> Dick Beyer <dbeyer at u.washington.edu> 04/01/05 2:50 PM >>>
Are the any plans for anyone to offer a package for the analysis of Affy
SNP chips? (10K, 100K, or 500K).

Richard P. Beyer, Ph.D.	University of Washington
Tel.:(206) 616 7378	Env. & Occ. Health Sci. , Box 354695
Fax: (206) 685 4696	4225 Roosevelt Way NE, # 100
 			Seattle, WA 98105-6099

Bioconductor mailing list
Bioconductor at stat.math.ethz.ch

Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.

More information about the Bioconductor mailing list