[BioC] problem with getGOOntology
sdavis2 at mail.nih.gov
Thu Apr 7 23:58:10 CEST 2005
On Apr 7, 2005, at 5:46 PM, Francois Pepin wrote:
>> I didn't find a function getGOontology. Can you post a little
>> self-contained piece of code that mimics the problem?
> It's in GOstats.
> function (x)
> if (!is.character(x))
> stop("need a character argument")
> if (length(x) == 0)
> wh <- mget(x, env = GOTERM, ifnotfound = NA)
> return(sapply(wh, Ontology))
My bad. The lowercase 'o' got me.
If you haven't already done it, looks like a line:
wh <- wh[!is.na(wh)]
right before the return line might do the trick.
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