[BioC] R from perl
sdurinck at ebi.ac.uk
Wed Dec 14 10:15:45 CET 2005
One possible solution on Windows is when you would have an R script that
can get the data it needs from some temporary files created by Perl and
knows what is has to do with it.
Then include this line in your Perl code:
my $cmd = `R CMD BATCH yourscript.R`;
make the R script write the output to some other temporary files which
are then read by Perl.
Instead of working with temp files you could also use a database ....
Sean Davis wrote:
>On 12/13/05 2:20 PM, "madhurima_b at persistent.co.in"
><madhurima_b at persistent.co.in> wrote:
>>Is R recognised as a proper command to run on dos?
>>From the RSPerl page--I have bad news:
>"A (very) brief description of calling R from Perl. This only works on Unix.
>(Only tested on Linux.) Do not expect this to run on Windows."
>Bioconductor mailing list
>Bioconductor at stat.math.ethz.ch
More information about the Bioconductor