[BioC] how to get samoutput$mat.fdr and samoutput$delta from SAM object ? - help

[Naomi Altman]

The following commands are very helpful:

names(object)

lists all the components in the object.

class(object)

gives the classname(s) such as SAMout or whatever.  Then ?SAMout 
usually says what is in the object.

--Naomi


At 08:04 AM 12/22/2005, Sean Davis wrote:



>On 12/22/05 7:53 AM, "Saurin Jani" <saurin_jani at yahoo.com> wrote:
>
> > Dear BioC,
> >
> > I am using siggenes package. If anyone have used,
> > please let me know, how can I get access of all
> > samoutput$fdr and samoutput$delta values from
> > samoutput object?
> >
> > This might be very easy..but and even I have also
> > opened Vignette but there is not information in
> > Vignette as well.(sam.out$mat.fdr  gives NULL)
>
>Saurin,
>
>I haven't used SAM in a while, but have you tried:
>
>str(sam.out)
>
>That will give you the structure of the sam.out object and may give you a
>hint about where to look.
>
>Sean
>
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Naomi S. Altman                                814-865-3791 (voice)
Associate Professor
Dept. of Statistics                              814-863-7114 (fax)
Penn State University                         814-865-1348 (Statistics)
University Park, PA 16802-2111