[BioC] posterior values in topTable for limma

[Adaikalavan Ramasamy]

Can I suggest that limma package returns the posterior probabilities
along with the log odds ratio, B ?

I am currently using the following codes to get the posterior values
(unless I am reading the documents wrong).


fit     <- lmFit(onebatch, design)
fit2    <- contrasts.fit( fit, contrast.mat )
fit2    <- eBayes(fit2)
results <- topTable(fit2)

results$post.prob <- exp(results$B) / ( 1 + exp(results$B) )

Hopefully this will get people to start thinking in terms of
probabilities and less on p-values. 

Thank you.

Regards, Adai