[BioC] R --vanilla and Annotation pkg

[Saurin Jani]

Hi Jeff,

When I install pkg. through my interactive session and
then I do vanilla which is my different session , it
works fine. that means I need to run my interactive
session first in order to get going with vanilla. 

do you know how I can not set up my libpaths in my R
script so, when ever I run my vanilla command, I just
put that line before libraries so, all will have
correct paths?

Thank you for your time,
Saurin



--- Jeff Gentry <jgentry at jimmy.harvard.edu> wrote:

> > But WHEN.....I run my script1.R by copy and paste 
> and
> > then I do R --vanilla , I DON'T get above error. 
> > has anyone had this problem..?
> 
> Are you sure that you're getting the same
> .libPaths() between your
> interactive R session and the R --vanilla?  That
> might very well not be
> the case, and if the package is installed in a
> directory that is in your
> interactive .libPaths but not in your vanilla
> session then you would see
> that behaviour.
> 
> 


=====
Saurin's WebWorld: http://hawkmail.monmouth.edu/~s0451884