[BioC] Limma User Guide: normalizeBetweenArrays

Gordon Smyth smyth at wehi.edu.au
Sat Jul 16 02:48:28 CEST 2005

>[BioC] Limma User Guide: normalizeBetweenArrays
>Naomi Altman naomi at stat.psu.edu
>Fri Jul 15 22:50:39 CEST 2005
>Is there a mistake on p. 67 of the Limma User's Guide (27 October 2004)?
>Firstly, MA.pq is not defined, but the density is plotted.
>Secondly, we have normalizeWithinArrays, although I think that quantile
>normalization is a
>normalizeBetweenArrays method.

Yes, there were a couple of errors in that section. They were fixed back in 
December. See the Limma change log entry for 2 December 2004. The current 
Bioconductor release of limma should reflect this.


>Naomi S. Altman                                814-865-3791 (voice)
>Associate Professor
>Bioinformatics Consulting Center
>Dept. of Statistics                              814-863-7114 (fax)
>Penn State University                         814-865-1348 (Statistics)
>University Park, PA 16802-2111

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