[BioC] organism = mouse or Mus Musculus in AnnBuilder

John Zhang jzhang at jimmy.harvard.edu
Wed Jun 8 13:59:07 CEST 2005

>I assume if I use Mus Musculus in getSrcUrl and mouse in ABPkgBuilder all will
>be ok. This seems a little inconsistent so are there plans to accept either
>common or official name? I assume if I use organism = "Mus Musculus" in
>ABPkgBuilder it will generate an error.

AnnBuilder now only takes scientific names. Please let me know if there is any 
function that does not comply and I will fix it. Thanks.

>(RH9 Linux, R 2.1.0, BioC 1.6 = AnnBuilder 1.5.31)
>Dr Chris Wilkinson
>Senior Research Officer (Bioinformatics) | ARC Research Associate
>Child Health Research Institute (CHRI)   | Microarray Analysis Group
>7th floor, Clarence Rieger Building      | Room 121
>Women's and Children's Hospital          | School of Applied Mathematics
>72 King William Rd, North Adelaide, 5006 | The University of Adelaide, 5005
>Math's Office (Room 121)        Ph: 8303 3714
>CHRI   Office (CR2 52A)         Ph: 8161 6363
>Christopher.Wilkinson at adelaide.edu.au
>Bioconductor mailing list
>Bioconductor at stat.math.ethz.ch

Jianhua Zhang
Department of Medical Oncology
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084

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