[BioC] memory problem with fitPLM in package affyPLM

Ben Bolstad bolstad at stat.berkeley.edu
Thu Jun 9 21:23:31 CEST 2005

> > try something like
> >
> > boxplot(Pset,ylim=c(0.9, 1.2))
> Does this mean for version 1.3.3, you set up a ylim for both boxplots (RLE
> and NUSE). The new RLE and NUSE plots I got from version 1.3.3 look
> different from the ones from version 1.2.5, the extremem outliers didn't
> show up in the former.

In version 1.3.3 RLE() and NUSE() should be used in preference to the
Mbox() and boxplot() commands you used previously. Additionally, both
RLE() and NUSE() have sensibly chosen default ylim.

Ben Bolstad <bolstad at stat.berkeley.edu>

More information about the Bioconductor mailing list