[BioC] misnamed annotation environments with annaffy

John Zhang jzhang at jimmy.harvard.edu
Fri Jun 10 15:02:51 CEST 2005

>An environment named "YEAST2GENENAMES" contains information normally  
>found by annaffy under the "SYMBOL" label.
>An environment named "YEAST2DESCRIPTION" contains information  
>normally found by annaffy under the "GENENAMES" label.
>The result of this is that nothing from DESCRIPTION is displayed (to  
>my knowledge, annaffy doesn't handle DESCRIPTIONs), and the  
>information in GENENAMES is displayed in the wrong place.

Yeast data packages were built using data source provided by SGD and thus 
follows SGD's's naming. If you do not like the names you may change them.

>Where do I need to do the renaming and can I do it with the package  
>already built?

The environments are all in the data subdirectory of the built package. Go there 
and rename the ones you like to.

>Thanks in advance,
>Bioconductor mailing list
>Bioconductor at stat.math.ethz.ch

Jianhua Zhang
Department of Medical Oncology
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084

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