[BioC] help with heat maps and clustering

Seth Falcon sfalcon at fhcrc.org
Tue Jun 14 17:52:10 CEST 2005

On 14 Jun 2005, bk_maimo at yahoo.com wrote:

> I am working on an affimetrix chip with time series data of the rat
> (u34a) I have gotten it into R and gotten the significant
> frequencies corresponding to circadian genes. I am curious as to how
> I to cluster these (heirachically, complete linkage) and get
> heatmaps using geneplotter. I tried to use the loaded package and it
> does not seem to produce results, can someone point me in the right
> direction?

Have you explored the vignette's?  Almost all BioC packages come with
mini HowTo's called vignettes that demonstrate the basic usage of the
package.  I suspect you will find what you are looking for.

+ seth

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