[BioC] missing probesets when creating cdf package with makecdfenv

James W. MacDonald jmacdon at med.umich.edu
Fri Mar 18 16:14:33 CET 2005

Malick Paye wrote:
> Hello all,
> I have some problems with the function 'make.cdf.package'. I
> installed Bioconductor, the affy package as well as the makecdfenv 
> package. Then I tried to create à CDF package using my CDF file, when
> creating and installing the package everything seems to be ok but
> when i read my cel files i realise that about 20% of my probesets are
> missing.

Which version of R, makecdfenv, affy, and what particular CDF?

> If someone met this kind of problem. ..
> Any help would be greatly appreciate.
> Malick,
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James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109

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