[BioC] simpleaffy

[Crispin Miller]

Hi,
The QC metrics are calculated as described in the vignette/QC
documentation you'll find in the package...
If you use

x <- call.exprs(Data)

It'll default to using RMA... Have a look at help("call.exprs") for more
details...

Crispin
 

-----Original Message-----
From: Hrishikesh Deshmukh [mailto:d_hrishikesh at yahoo.com] 
Sent: 23 March 2005 14:40
To: Crispin Miller; Georg Otto
Cc: bioconductor at stat.math.ethz.ch
Subject: RE: [BioC] simpleaffy

Hi All,

I create an affybatch using:
Data<-ReadAffy()
myqc<-qc(Data)

What is the "default" algorithm that is invoked if i don't specify
rma/mas5.0!!

Thanks,
Hrishi


		
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