[BioC] getBioC and install.packages2 fail
ramasamy at cancer.org.uk
Tue Mar 29 17:28:07 CEST 2005
What OS ? Are you able to do this successfully ?
"http://www.bioconductor.org/repository/release1.5/package/Source/gpls_1.0.6.tar.gz", destfile="/tmp/junk" )
If yes, that should rule out any firewall problem. If no, then see help
(download.file) or search the R-help archives for solution.
If you are able to download successfully,then it might be some problem
Since proteomics comprises only 3 packages, it might be worth to just
download them manually and install it.
On Tue, 2005-03-29 at 17:00 +0200, Arne.Muller at sanofi-aventis.com wrote:
> I've an installation problem. I'm running R 2.0.1 and BioC 1.5. . I'd like to install the 'proteomics' package. Getting the most recent getBioC fucntion works fine (I'm behind a firewall). ReposTools and tools get loaded automatically and then the script terminates without any error message and withour installing the proteomics package:
> > getBioC(libNam='proteomics', method='wget')
> Running getBioC version 1.2.69....
> If you encounter problems, first make sure that
> you are running the latest version of getBioC()
> which can be found at: www.bioconductor.org/getBioC.R
> Please direct any concerns or questions to bioconductor at stat.math.ethz.ch.
> Loading required package: reposTools
> Loading required package: tools
> When running install.packages2('gpls')
> nothing happens either, no error, no output no instllation :-(
> Any ideas what goes wrong?
> thanks a lot for your help,
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
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