[BioC] Detection call for Hu6800

Christian.Stratowa at vie.boehringer-ingelheim.com Christian.Stratowa at vie.boehringer-ingelheim.com
Wed Mar 30 10:07:49 CEST 2005


Dear BioC people

Could it be that neither detection.p.value (simpleaffy) nor mas5calls (affy)
work with Hu6800 chips?

I get the following errors:

> M17 <- ReadAffy(filenames=c("M17.cel"))
> dpv17 <- detection.p.val(M17)
Error in if (alpha1 < 0) { : missing value where TRUE/FALSE needed
> dpv17 <- mas5calls(M17)
Getting probe level data...
Computing p-values
Making P/M/A Calls
Error in if (y < alpha1) { : missing value where TRUE/FALSE needed
> dpv17 <- mas5calls(M17,ignore.saturated=F)
Getting probe level data...
Computing p-values
Making P/M/A Calls
Error in if (y < alpha1) { : missing value where TRUE/FALSE needed
>

Best regards
Christian Stratowa



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