[BioC] Tiger, R, Bioconductor

[Cyrus Harmon]

64-bits aside, I'd appreciate an update on what the community  
consensus is regarding Tiger and BioC. Now that I've managed to build  
R for Tiger, I'm trying to install various BioC packages and running  
into trouble. Two initial problems:

1. gcrma can't seem to find the R framework (granted, this is  
installed in a non-standard location, but other packages seem to be  
able to do this fine)

2. SparseM doesn't seem to like the gfortran compiler.

3. affyPLM has a log2 function which conflicts with the defintion in  
math.h. In particular, the LESN.c version is declared static and the  
math.h one isn't. GCC 4 chokes on this.

I'm sure there's more, but this are the initial show-stoppers for me.

Thanks,

Cyrus

On May 4, 2005, at 10:56 AM, David Seo wrote:

> Stefano,
>
> I was looking at some posts with regards to Tiger and R.  Could you  
> tell me what is going on with the 64 bit version?  Would this be  
> compatible with the Bioconductor Binaries?
>
> Much thanks for you and your groups efforts, R is a remarkable  
> package.
>
> David Seo
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
>