[BioC] annotation package rgu34a

[Yanqin Yang]

Hi Jim,
 
It worked! Thank you very much! Actually, it turned out R download the rgu34a 1.7.0 again since I changed the version number in the DESCRIPTION file. Did I use the wrong version of annaffy package?
 
Thanks again!
 
Yanqin

James MacDonald <jmacdon at med.umich.edu> wrote:
Try this version of annaffy. Let me know if it works (I am assuming you
are on windows).

Jim



>>> Yanqin Yang 5/12/2005 2:37:55 PM >>>
Hi Jim,

Thanks for the suggestion. I tried it and it didn't work out. I got the
same error message as before. Any other suggestion I could try?

Thanks!

Yanqin

James MacDonald wrote:
Hi Yanquin,

This is due to a slight bug in annaffy. The quick fix is to open the
DESCRIPTION file in the rgu34a package directory with an editor and
change the version field to say 1.6.8 . It should then work.

Best,

Jim



James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623

>>> Yanqin Yang 5/12/2005 12:34:49 PM >>>
I used rgu34a version 1.7.0 package for my annotation last week and it
worked very well. However, when I tried to use the same code to run my
new gene list for annotation this morning, I kept getting the error
message. I went to bioconductor and redownload the rgu34a package
although I believed it didn't change within last few days. And I still
got the same error message. Would anyone tell me where I could find
the
correct version of rgu34a package for R2.1.0?
atab <- aafTableAnn( Names, "rgu34a", aaf.handler() )
[1] "You have package rgu34a but the incorrect version"
Note: http://www.bioconductor.org/data/metaData does not seem to have
a
valid repository, skipping 
Warning message:
Failed to read replisting at http://www.bioconductor.org/data/metaData

in: getReplisting(repURL, repFile, method = method) 
Note: http://www.bioconductor.org/data/metaData-devel does not seem to
have a valid repository, skipping 
Error in hasFiles(rep) : no direct or inherited method for function
'hasFiles' for this call
In addition: Warning message:
Failed to read replisting at
http://www.bioconductor.org/data/metaData-devel in:
getReplisting(repURL, repFile, method = method)


Thanks a lot!

Yanqin




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