[BioC] makeProbePackage problem

[Liqun He]

Dear all,
 
I am trying to make a CDF package and probe package on a custom chip,
which is not inside the affy package. I am using a redhat linux system,
with R2.1.0 installed.
First I create CDF package using the cdf file.
>make.cdf.package(chipx.CDF)
Reading CDF file.
Creating CDF environment
Creating package in /../chipxcdf 
[1] "chipxcdf"
it produce a cdf package subdirectory "chipxcdf"
 
Then on the root terminal I do 
>R CMD INSTALL chipxcdf
* Installing *source* package 'chipxcdf' ...
** R
** data
** help
 >>> Building/Updating help pages for package 'chipxcdf'
     Formats: text html latex example 
** building package indices ...
*DONE (chipxcdf)
 
Then I am trying to create probe package using the makeProbePackage as
described and met the problem.
> library(matchprobes)
Loading required package: Biobase
Loading required package: tools
> library(chipxcdf)
> makeProbePackage("chipxcdf", datafile=gzfile("chipx_probe_.tab.gz",
open ="r"),maintainer="me", version="0.0.1" )
Importing the data.
Loading required package: affy
Loading required package: reposTools
Error in library("chipxcdf") : there is no package called 'chipxcdf'
 
I don't know why I have this error message, Could someone point out
what's wrong and give a help?
 
Thanks a lot!
 
Kind regards,
Liqun
 
 
 
 
 

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