[BioC] AffyProbes abd genome

Hrishikesh Deshmukh d_hrishikesh at yahoo.com
Mon May 23 16:44:40 CEST 2005


Pardon my ignorance.
How would i get the chromosomal locations written to a
text file for all the probes on HGU_95Av2. 

Thanks,
Hrishi

--- James MacDonald <jmacdon at med.umich.edu> wrote:
> hgu95av2CHRLOC in the hgu95av2 package.
> 
> Best,
> 
> Jim
> 
> 
> 
> James W. MacDonald
> Affymetrix and cDNA Microarray Core
> University of Michigan Cancer Center
> 1500 E. Medical Center Drive
> 7410 CCGC
> Ann Arbor MI 48109
> 734-647-5623
> >>> Hrishikesh Deshmukh <d_hrishikesh at yahoo.com>
> 05/21/05 3:03 PM >>>
> HiAll,
> I want to know from Affymetrix for HGU_95Av2 chip
> (all
> the probes) where on the human genome the probes
> will
> align  to?!
> Basically what regions on the chromosomes the probes
> were designed for?
> For example 1000_at probeset has 16 probes and i
> want
> to know where on the human genome each of these
> probes
> align to, i want start and stop positions for each
> of
> the probes alignment?
> 
> Thanks in advance.
> Hrishi
> 
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> 
> 
>
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