[BioC] What's new in the graph package
sfalcon at fhcrc.org
Fri Apr 28 06:33:13 CEST 2006
The graph package provides data structures and methods for
representing and computing on graphs (collections of nodes and edges).
Version 1.10.0, available in the Bioc 1.8 release (requires R 2.3.0)
includes a number enhancements as described below.
* Node and edge attribute handling improved and documented. For
* New way to create graphNEL instances
We now accept two structures for the edgeL argument, a list similar
in structure to that returned by edges(g) and a more complicated
nested structure as documented for edgeL.
* GXL improvements
Node and edge attributes are now handled by fromGXL and toGXL.
Fixes for writing undirected graphs.
* Coercion methods improved
Added graphAM <==> graphNEL coercion. Speedup for matrix ==>
* Many other small bug fixes and improvements.
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