[BioC] Bioconductor installation problem

Seth Falcon sfalcon at fhcrc.org
Mon Aug 28 22:05:47 CEST 2006


Debashis Bhattacharya <bhattach at simbiosys-biowares.com> writes:

> I have installed R version 2.3.1, on Mac (OS 10.4.7, on an Intel CoreDuo 
> iMac).
>
> When I try to install bioconductor -- following instructions, using 
> biocLite() -- it downloads
> the packages mentioned on the install page. However, the instatllation 
> does not complete.
>
> I get the following message after the downloads are complete:
>
> ------
> The downloaded packages are in
>     /tmp/RtmpJdBYlA/downloaded_packages
> Warning messages:
> 1: number of rows of result
>     is not a multiple of vector length (arg 2) in: cbind(1, res0, 
> Repository = repos)
> 2: cannot create HTML package index in: make.packages.html()
> ------
>
> I have tried installation with only one package (affy), and still face 
> the same problem. The entire log
> for affy is as follows:

Those are "just" warning messages.  Did the packages actually get
installed?  What happens when you do:

library("affy")

in R?



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