[BioC] aCGH across samples
sdavis2 at mail.nih.gov
Wed Dec 6 18:42:15 CET 2006
On Wednesday 06 December 2006 10:49, Daniel Brewer wrote:
> In the new year, I am going to start work on a large aCGH dataset from
> quite a few different samples. I am new to CGH analysis. What I would
> like to know the best way to find amplicons or deletions that are shared
> in the majority of samples (a statistic would be useful). More
> specifically I would like to find the smallest common differential
> regions that contain a known gene.
Look at the STAC algorithm:
pubmed id: 16899652
Also, there is the cghMCR package in the bioconductor repository.
More information about the Bioconductor