[BioC] Odds Ratio in GOstat

Seth Falcon sfalcon at fhcrc.org
Tue Dec 12 01:00:14 CET 2006

Just a quick update:

Naomi sent me data offlist and I can reproduce the problem with the
count and size.  I'm investigating...

I think it may be related to the ath1121501 annotation package and
differences in how it is structured from other annotation packages.

> One thing I noticed is that the "universe" sent by the investigator
> does not include all the genes in the test set.  

Clearly that doesn't make a lot of sense.  I'm pretty sure the
hyperGTest code would remove the genes from the test set that are not
in the specified universe.

+ seth

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