[BioC] EST´s mapped to a structural variation region
sdavis2 at mail.nih.gov
Fri Dec 15 12:56:12 CET 2006
On Friday 15 December 2006 05:43, JoÃ£o Fadista wrote:
> Dear all,
> I have made a microarray experiment with some EST´s (expression sequence
> tags) and I would like to see if those EST´s are in a known region of
> structural variation in the human genome.
> So I was wondering if anyone knows if there is any R/BioC package or other
> software where I can input all my EST´s ( their sequence in FASTA format
> or their positions in the genome) and then retrieve an output file with
> those that are mapped to a known region of structural variation.
As far as I know there are no bioconductor packages for doing this. You may
want to look at using the UCSC table browser for doing a task like this. I
think it will be possible. You can write to them (there is a link on their
site) for assistance--they are quite helpful and prompt.
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