[BioC] finding cliques with packages Graph and RBGL

[lilong at isb-sib.ch]

Hi,

Then try to read the output vertically :)  In your example (quoted below),
there are two max cliques: each is of size 28, the 28 nodes of each clique
are listed in [,1] or [,2].

Li

> Hi,
> I am sorry, but I cannot find RBGL/R/interfaces.R in the R library
> directory

>> >> > and in the "next" step the output is the following:
>> >> >
>> >> > $maxCliques
>> >> >       [,1] [,2]
>> >> >  [1,] "1"  "1"
>> >> >  [2,] "3"  "3"
>> >> >  [3,] "6"  "6"
>> >> >  [4,] "7"  "7"
>> >> >  [5,] "8"  "8"
>> >> >  [6,] "9"  "9"
>> >> >  [7,] "11" "11"
>> >> >  [8,] "12" "12"
>> >> >  [9,] "14" "14"
>> >> > [10,] "16" "16"
>> >> > [11,] "17" "17"
>> >> > [12,] "18" "18"
>> >> > [13,] "19" "19"
>> >> > [14,] "20" "20"
>> >> > [15,] "21" "21"
>> >> > [16,] "24" "24"
>> >> > [17,] "25" "25"
>> >> > [18,] "26" "26"
>> >> > [19,] "27" "27"
>> >> > [20,] "30" "30"
>> >> > [21,] "31" "31"
>> >> > [22,] "32" "32"
>> >> > [23,] "35" "35"
>> >> > [24,] "36" "36"
>> >> > [25,] "37" "37"
>> >> > [26,] "39" "39"
>> >> > [27,] "40" "40"
>> >> > [28,] "33" "22"
>> >> >
>> >> > The number of node in each cliques in always 1.
>> >> >
>> >> > degree:
>> >> >  1  3  6  7  8  9 11 12 14 16 17 18 19 20 21 22 24 25 26 27 30 31
>> 32
>> >> 33
>> >> 35
>> >> > 36
>> >> > 28 28 28 28 28 28 28 28 28 28 28 28 28 28 28 27 28 28 28 28 28 28
>> 28
>> >> 27
>> >> 28
>> >> > 28
>> >> > 37 39 40
>> >> > 28 28 28