[BioC] Time course experiment....
smyth at wehi.edu.au
Mon Jan 2 14:51:33 CET 2006
Well, there are lots of ways to generate such a table. Perhaps the simplest is
fitsel <- fit2[sel.dif, ]
as.data.frame( fitsel )
>Date: Tue, 20 Dec 2005 14:03:43 -0500
>From: "Khan, Sohail" <khan at cshl.edu>
>Subject: [BioC] Time course experiment....
>To: <bioconductor at stat.math.ethz.ch>
>I have performed a time course analysis using limma, as described in
>"Bioinformatics and Computational Biology Solutions ........".
>How can I get a list of differentially expressed genes? I've tried
>the code below:
>This produces a logical vector, right?. I would like a table of
>differentially expressed genes with p vales etc. Sorry, if I missed
>this in the limma user's guide. Thanks for any suggestions.
>COLD SPRING HARBOR LABORATORY
>Genome Research Center
>500 Sunnyside Boulevard
>Woodbury, NY 11797
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