[BioC] problems with GO package data

Ting-Yuan Liu tliu at fhcrc.org
Thu Jan 26 19:12:43 CET 2006


Hi Yu-An,

I think the error message is not written in English, right?  Could you 
translate it to English so that it will be more helpful.

I cannot reproduce the same error in my machine, and here is the result:
> GOLOCUSID2GO[["4121"]]
$"GO:0005975"
$"GO:0005975"$GOID
         IEA
"GO:0005975"

$"GO:0005975"$Evidence
[1] "IEA"

$"GO:0005975"$Ontology
[1] "BP"


$"GO:0006487"
$"GO:0006487"$GOID
         IEA
"GO:0006487"

$"GO:0006487"$Evidence
[1] "IEA"

$"GO:0006487"$Ontology
[1] "BP"

.... skip ...

Here is the result of my sessionInfo():
> sessionInfo()
R version 2.2.1, 2006-01-04, x86_64-unknown-linux-gnu

attached base packages:
[1] "methods"   "stats"     "graphics"  "grDevices" "utils"     "datasets"
[7] "base"

other attached packages:
      GO
"1.10.0"


Could you also provide the sessionInfo() output for more information 
please?  Thanks.

Ting-Yuan
______________________________________
Ting-Yuan Liu
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
Seattle, WA, USA
______________________________________

On Wed, 25 Jan 2006, Yu-An Dong wrote:

> Hello, I've installed BioC 1.7 (with R 2.2.0) without problem. The GO 
> package was installed but I can't
> access the data:
> 
>  > GOLOCUSID2GO[["4121"]]
> Fehler: rekursive Standardargument Referenz
> 
> And I get similar error messages with the other functions in the GO 
> package. Any suggestions? Thanks!
> 
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