[BioC] Scripts to handle array CGH data files from NimbleGen

[Steven McKinney]

Before I reinvent the wheel, has anyone set up scripts to read in
array CGH data files from NimbleGen, for use in the aCGH package or
a similar package?

I have normalized NimbleGen files
([array_id]_[identifier]_normalized.txt in the NimbleGen naming scheme)
several to a directory, to read in and use to create an aCGH object.

Any info appreciated.

Best

Steve McKinney



Steven McKinney

Statistician
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre

smckinney at bccrc.ca