[BioC] SAM and siggenes: 4 questions

Mohammad Esad-Djou shahrgol at web.de
Sat Mar 25 16:02:39 CET 2006


Hello, 
I gets the following table with siggenes package: 
 

 	Delta	p0	False	Called	FDR
1	5	0,259	2,625	21	0,0323
2	12,4	0,259	2,125	17	0,0323
3	19,8	0,259	1,75	14	0,0323
4	27,2	0,259	0,875	7	0,0323
5	34,5	0,259	0,25	2	0,0323
6	41,9	0,259	0,25	2	0,0323
7	49,3	0,259	0,25	2	0,0323
8	56,6	0,259	0,25	2	0,0323
9	64	0,259	0,25	2	0,0323
10	71,4	0,259	0	0	0

I have the following questions: 

1. can someone give me please detailed description over the parameters? 
(Delta	p0	False	Called	FDR)

2. How is computed the parameters?

3. How can I interpret the results correct? 

4. I found no suitable literature over it (except 2 articles by Robert Tibshirani and 1 by Holger Schwender ). How can I find more literature over it? 


Thanks in advance,
Mohammad Esad-Djou


Interdisziplinäres Zentrum für Bioinformatik (IZBI)
Universität Leipzig 
Härtelstr. 16 - 18
D-04107 Leipzig



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