[BioC] Annaffy problem loading metadata

[Bornman, Daniel M]

Those are the obvious and most likely issues, however...
I have not yet upgraded to 2.3.0
I have the mouse4302 package and 'library(mouse4302)' is part of my
code.


-----Original Message-----
From: Jenny Drnevich [mailto:drnevich at uiuc.edu] 
Sent: Thursday, May 11, 2006 3:22 PM
To: Bornman, Daniel M
Subject: Re: [BioC] Annaffy problem loading metadata

Hi Daniel,

Did you recently upgrade to R 2.3.0? If so, the mouse4302 metadata
package is in the old R library, not in the new one. You'll need to
download the
mouse4302 package again from the BioC 1.8 repository, which is
compatible with R 2.3.0 and has been updated more recently than the old
one.  If you haven't changed R versions, maybe you just need to
library(mouse4302) first?

Cheers,
Jenny

At 02:08 PM 5/11/2006, you wrote:

>BioC,
>
>I am using the annaffy package and have used it many times before as 
>well as the mouse4302 metadata package.  However, when I call the
>aafTableAnn() method and pass in my chip name ("mouse4302"), I get an 
>error message saying "You are missing mouse4302...".
>Anybody got an idea what's going on here?
>
>Thanks,
>
>Daniel Bornman
>Researcher
>Battelle Memorial Institute
>505 King Ave
>Columbus, OH 43201
>614.424.3229
>
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Jenny Drnevich, Ph.D.

Functional Genomics Bioinformatics Specialist W.M. Keck Center for
Comparative and Functional Genomics Roy J. Carver Biotechnology Center
University of Illinois, Urbana-Champaign

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1201 W. Gregory Dr.
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