[BioC] RBGL 1.8.1 installation error on linux

[Wolfgang Huber]

Hi Li,

great! I just managed to install RBGL 1.9.2 from svn revision 18245, on
a computer with gcc 4.1.0, without compiler errors, and to attach the
library.

> sessionInfo()
Version 2.3.1 RC (2006-05-29 r38219)
x86_64-unknown-linux-gnu

attached base packages:
[1] "methods"   "stats"     "graphics"  "grDevices" "utils"     "datasets"
[7] "base"

other attached packages:
    RBGL    graph    Ruuid
 "1.9.2" "1.10.4" "1.10.0"


huber at boltzmann:~/madman/Rpacks> uname -a
Linux boltzmann 2.6.16.13-4-smp #1 SMP Wed May 3 04:53:23 UTC 2006
x86_64 x86_64 x86_64 GNU/Linux

huber at boltzmann:~/madman/Rpacks> gcc --version
gcc (GCC) 4.1.0 (SUSE Linux)


PS there was only one warning, from sna.cpp:

g++ -I/home/huber/R-rc/include -I/home/huber/R-rc/include
-I/usr/local/include  -IboostIncl  -fpic  -O3 -c sna.cpp -o sna.o
sna.cpp: In function ‘SEXPREC* lambdaSets(SEXPREC*, SEXPREC*, SEXPREC*,
SEXPREC* )’:
sna.cpp:204: warning: converting to ‘int’ from ‘double’

------------------------------------------------------------------
Wolfgang Huber  EBI/EMBL  Cambridge UK  http://www.ebi.ac.uk/huber





Li.Long at isb-sib.ch wrote:
> Hi, Johannes, Jeff and others,
> 
> Getting back to this.  It seems that there's some interplay among the
> header files which caused compilation errors (big time).  I separated the
> troubled function (for transitive.closure) and I could go through w/o
> problems.
> 
> The codes are in svn: RBGL1.9.2.
> 
> If you have sometime, could you please try it and let me know if it works
> in your previous setting?
> 
> Thanks a great deal!
> 
> Li
> 
>