[BioC] hyperGTest and ath1121501-continued

[Tine Casneuf]

Dear Nianhua & list,

to continue the discussion on the hyperGTest and ath1121501 
(https://stat.ethz.ch/pipermail/bioconductor/2006-October/014715.html). 
As far as I understood, this function needs the ENTREZID variable of the 
studied environment, which in this case doesn't exist (~because we work 
with the AGI-IDs and not the entrezIDs):

 > hgOver <- hyperGTest(params)
Error in get(x, envir, mode, inherits) : variable "ath1121501ENTREZID" 
of mode "environment" was not found

Did I completely miss it and is there a way around this problem or 
should I look for another function, like Thomas Girke's GOHyperGAll?

Many thanks in advance,

Tine