[BioC] from rat codelink to human locuslink

Weiwei Shi helprhelp at gmail.com
Fri Nov 3 23:03:12 CET 2006


Hi, Steffen:

It seems that it works b/c my internal method (using Oracle + Python)
gives me the same number of identified unigene ids but :
> system.time(t0 <- getHomolog(id = ratUnigene, from.type="unigene",
+ to.type="entrezgene",from.mart=rat, to.mart=human))
stack imbalance in .Call, 119 then 120
stack imbalance in <-, 117 then 118
stack imbalance in {, 115 then 116
stack imbalance in standardGeneric, 103 then 104
stack imbalance in class, 98 then 99
stack imbalance in <-, 96 then 97
stack imbalance in {, 94 then 95
stack imbalance in <-, 88 then 89
stack imbalance in {, 86 then 87
[1] 11.284 15.534 32.705  0.000  0.000
> dim(t0)
[1] 4285    2

so, what are those stack imbalance..?

This time it really is fast. Thanks.



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