[BioC] Error message when creating PDenv

[Benilton Carvalho]

Hi Christophe,

that suggests you need more memory. We're currently working on a  
solution that consumes less memory. What's the configuration of the  
machine you have available?

thanks,

b



On Nov 7, 2006, at 8:06 AM, Christophe Poulet wrote:

> Hello,
> Thanks for your last answer.
> When I try to execute the commands, R sends me a new error message:
>
> > library(makePlatformDesign)
> Loading required package: affyio
> Loading required package: oligo
> Loading required package: Biobase
> Loading required package: tools
>
> Welcome to Bioconductor
>
>     Vignettes contain introductory material. To view, type
>     'openVignette()' or start with 'help(Biobase)'. For details
>     on reading vignettes, see the openVignette help page.
>
> Loading required package: splines
>
> Welcome to the oligo Package!
>
>     This package is under development,
>     and therefore its documentation is
>     to be improved. Please contact Benilton
>     at bcarvalh <AT> jhsph <DOT> edu,
>     in case you need further help.
> Warning messages:
> 1: package 'makePlatformDesign' was built under R version 2.5.0
> 2: package 'oligo' was built under R version 2.5.0
> > makePDpackage("Mapping50K_Xba240.CDF",
> + "Mapping50K_Xba240_probe_fasta",
> + "Mapping50K_Xba240_annot.csv",
> + type="SNP")
> affymetrix SNP
> The package will be called pdmapping50kxba240
> Reading Mapping50K_Xba240.CDF
> Creating environment....................Error: cannot allocate  
> vector of size 460 Kb
> In addition: There were 50 or more warnings (use warnings() to see  
> the first 50)
> > warning()
> Warning message:
> >
>
> What should I do?
> Thanks for your time.
> Best Regards,
>
> Christophe Poulet
> Laboratoire de Cytogénétique, CHU
> Université de Liège, Sart Tilman
> christophe.poulet at hotmail.com
>
>
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