[BioC] Problems with Affy names / BGA

[aedin culhane]

Dear Heike
I have not encountered this problem with Affy data, but it sounds like a 
R error caused by moving between a matrix and data.frame.  I convert 
affy data using data.frame(exprs(arraydata)), as ade4 expects data in 
data.frame.

Can you email me a subset of the data which is giving you this problem. 
  Or can you run a traceback() on this, so I can pin-point the problem.
Thanks a million
Aedin


 >I tried bga with different lists, and in most cases, this works fine.
 >But however, sometimes the following error message appears:
 >Error in "dimnames<-.data.frame"(`*tmp*`, value = list(c("217367_s_at",
 >
 >         invalid 'dimnames' given for data frame
 >

-- 
Aedín Culhane,
Research Associate in Prof. J Quackenbush Lab
Harvard School of Public Health, Dana-Farber Cancer Institute

44 Binney Street, SM822  ****Please note change of address****
Department of Biostatistics and Computational Biology,
Dana-Farber Cancer Institute
Boston, MA 02115
USA

Phone: +1 (617) 632 2468
Fax:   +1 (617) 582 7760
Email: aedin at jimmy.harvard.edu
Web URL: http://www.hsph.harvard.edu/researchers/aculhane.html