[BioC] Scripts to handle array CGH data files from NimbleGen

[ma3mls at bath.ac.uk]

Hi Romain

The package snapCGH also has functionality for reading of Nimblegen 
aCGH data, and provides preprocessing methods from within itself and 
the package limma, as well as use of the segmentation method from 
tilingArray (although not much of the other functionality from 
tilingArray).

Mike Smith

Quoting Todd Richmond <todd at nimblegen.com>:

> Hi Romain,
>
> I have some preliminary code which reads in NimbleGen CGH ratio files,
> passes it to tilingArray, and produces plots and tables identical to our
> deliverables. It still needs a bit more work and testing but I should
> have that ready sometime next week. I'll send you an email when it's ready.
>
> Todd
>
>
> rdesprat wrote:
>> Dear Todd,
>>
>>
>>
>> I am trying to use Tilling array for my CGH data from nimblegen but I don'
>> succeed. Would you have something written down about how to do it ?
>>
>>
>>
>>
>>
>> Romain Desprat
>>
>>
>>
>> PhD student
>>
>> Albert Einstein Medical School (NY)
>>
>> rdesprat at aecom.yu.edu
>>
>> 7184303119
>>
>>
>> 	[[alternative HTML version deleted]]
>>
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>>
>
>
> --
> Todd Richmond, PhD
> Manager of Research Informatics
> NimbleGen Systems, Inc
> Madison, WI 53719
> 1-608-218-7600
>
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