[BioC] tilingArray - problem calculating confidence intervals

[Krys Kelly]

I am using R2.3.1. I am trying to run the package tilingArray following the
information in the vignette, "The segment function to fit a piecewise
constant curve", and the "Segmentation demo". I downloaded tilingArray and
allthe necessary packages from the Bioconductor website last week. 

I could not find any reference to my problem in the archive.

When I try to calculate the confidence intervals, I get the message
Error: could not find function "confint.breakpointsfull"

The script and output are copied below.

I will be grateful for any help.

Thanks

Krys

> library(tilingArray)
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy
Loading required package: affyio
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: strucchange
Loading required package: zoo
Loading required package: sandwich
Loading required package: colorspace

Attaching package: 'colorspace'


        The following object(s) are masked from package:grDevices :

         hcl 

Loading required package: vsn
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: geneplotter
Loading required package: annotate
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
> 
> INFILE  <- "RH_i_vs_cell.txt"
> array <- read.table(INFILE, header=TRUE)
> 
> maxseg <- 500
> maxk   <- 150
> seg <-segment(array$value, maxk=maxk, maxseg=maxseg)
> 
> # Get the confidence intervals
> segCI <- confint(seg, parm=111, level=0.95)

Error: could not find function "confint.breakpointsfull"

 
Dr Krystyna A Kelly
University of Cambridge
Department of Pathology
Molteno Building, Tennis Court Road
Cambridge CB2 1QP
Tel:    01223 333331
Email: kak28 at cam.ac.uk