[BioC] retrieving upstream/intronic sequences using biomaRt

Shamit Soneji shamit.soneji at imm.ox.ac.uk
Wed Sep 13 12:58:48 CEST 2006


Is it possible using biomaRt (or any other R/BioC means) to download the
upstream and intron sequences for any given ensembl ID?

I know this can be done just using straight biomart, but a facility like
this from R would be very useful if one wants to search for TF binding
sites.

Many thanks

Shamit



More information about the Bioconductor mailing list