[BioC] biocLite() fails to install all limma dependencies from CRAN

Jenny Drnevich drnevich at uiuc.edu
Fri Apr 27 22:48:35 CEST 2007


Hi all,

I just installed R 2.5 today and then installed Bioconductor 2.0 
using the recommended biocLite(). I then tried to call 
duplicateCorrelation() from limma, but got this error:

 > corfit <- 
duplicateCorrelation(MA.nobg.scale,design,ndups=1,block=c(1,1,2,2))
Loading required package: statmod
Error: could not find function "mixedModel2Fit"
In addition: Warning message:
there is no package called 'statmod' in: library(package, lib.loc = 
lib.loc, character.only = TRUE, logical = TRUE,


It appears that biocLite() didn't get the statmod package from CRAN. 
Once I downloaded and installed statmod, everything was fine. I don't 
remember having to do this in the past, so did something get 
accidentally changed?

Thanks,
Jenny

Jenny Drnevich, Ph.D.

Functional Genomics Bioinformatics Specialist
W.M. Keck Center for Comparative and Functional Genomics
Roy J. Carver Biotechnology Center
University of Illinois, Urbana-Champaign

330 ERML
1201 W. Gregory Dr.
Urbana, IL 61801
USA

ph: 217-244-7355
fax: 217-265-5066
e-mail: drnevich at uiuc.edu



More information about the Bioconductor mailing list