[BioC] GO query

Seth Falcon sfalcon at fhcrc.org
Thu Aug 23 16:16:55 CEST 2007


"Yogi Sundaravadanam" <yogi.sundaravadanam at agrf.org.au> writes:
> I have a set of differentially expressed genes that I am interested in
> and I want to find the GO ontologies they are associated with. Is there
> a way I would be able to do this in any bioconductor package? Id be
> very grateful for this

There are a number of packages that can do things along these lines.
You might look at GOstats (perhaps start with the vignette) and also
look at:

   http://bioconductor.org/packages/2.0/GO.html

+ seth

-- 
Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center
BioC: http://bioconductor.org/
Blog: http://userprimary.net/user/



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