[BioC] pairs(): different ylim , xlim for upper.panel and lower.panel?

[Wolfgang Huber]

Dear Stefan,

> 2)The ma.plot help page indicates that the plot.method argument has to be 
> set to "add" if the MvA plot is to be added to an existing plot like in my 
> case; and indeed, setting it to "smoothScatter", leads to an error message 
> :
> 
> Error in pairs.default(matr[gvIndex, c(1, 28)], panel = panel.mva) : 
>   the 'panel' function made a new plot
> 
> The MA plot is not positioned properly and 'jumps' to the next matrix 
> position.
> 
> Is there a possibility to use smoothscatter in conjunction with pairs()? I 
> tried to assign add=T to ma.plot() in my panel.mva function which did not 
> work.
> 

Have a look at the man page / examples of "smoothScatter" :)

-- 
Best wishes
 Wolfgang

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Wolfgang Huber  EBI/EMBL  Cambridge UK  http://www.ebi.ac.uk/huber