[BioC] Wow, what have I done

[Loren Engrav]

So
 ReadAffy for 81 .cel files failed memory (I had 2.5gig)
 justGCRMA loaded 81 but created a class problem for other processes
 
Was out shopping and The Mac Store had RAM sale, 25% off
So put in 4gig, now totaling 6gig

Video editing and other RAM hungry apps are now in heaven

But I try ReadAffy() for 81 .cel files and....
Same thing, cannot allocate vector

I guess hitting the 32bit limit at 4gig

I guess
1) reduce chips
2) study piecemeal
3) try 64bit R

MacOS 10.4.11

-- 
Loren Engrav
Univ Washington
Seattle







> From: Loren Engrav <engrav at u.washington.edu>
> Date: Sun, 09 Dec 2007 08:01:42 -0800
> To: "bioconductor at stat.math.ethz.ch" <bioconductor at stat.math.ethz.ch>
> Conversation: [BioC] Wow, what have I done
> Subject: Re: [BioC] Wow, what have I done
> 
> I think you are correct thank you
>  justGCRMA "solved" the memory problem but now a "class" problem to solve
>  or maybe just buy the RAM
>  
> 
> 
> 
> From: Sean Davis <sdavis2 at mail.nih.gov>
> Date: Sun, 9 Dec 2007 08:09:41 -0500
> To: Loren Engrav <engrav at u.washington.edu>
> Cc: "bioconductor at stat.math.ethz.ch" <bioconductor at stat.math.ethz.ch>
> Subject: Re: [BioC] Wow, what have I done
> 
> 
> 
> On Dec 8, 2007 11:52 PM, Loren Engrav <engrav at u.washington.edu> wrote:
>> Well I guess not done
>> 
>> So I have the justGCRMA object "Gibran81"
>> 
>> And try
>> 
>>> QCReport(Gibran81,file="AffyQCReportGibran81.pdf")
> 
> You might check the help for QCReport().  Does QCReport take for input an
> ExpressionSet?  What is the class of Gibran81?  Is it a class that would be
> expected to work with QCReport() given what the help file says?
> 
> Sean
> 
> 
>