[BioC] Gene Database Files (eg gene2accession) complete?

[Benjamin Otto]

Hi Niahnhua, Sean,

As for the sequences: Unfortunately I don't have them. But I do agree this
would be the most accurate solution.
And as for the refseq ftp site: I already ha a look on that one. But I'll
have a look at the link you sent Nianhua, thanks a lot...

Many thanks again and sincere regards

Benjamin

-----Ursprüngliche Nachricht-----
Von: bioconductor-bounces at stat.math.ethz.ch
[mailto:bioconductor-bounces at stat.math.ethz.ch] Im Auftrag von Nianhua Li
Gesendet: 21 February 2007 18:30
An: bioconductor at stat.math.ethz.ch
Betreff: Re: [BioC] Gene Database Files (eg gene2accession) complete?

Hi, Benjamin,

You may want to check out
ftp://ftp.ncbi.nih.gov/refseq/special_requests/
The file "suppressed_temporary" contains "NM_032722". 
gene2accession and gene2refseq (from the gene ftp site) only contain
accessions that can be mapped to genes. 
If you want to match refseq ids, you should focus on the refseq ftp site. 

best

nianhua

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