[BioC] from BAC name to list of genes in that BAC

[Federico Abascal]

thank you very much for your responses Hilmar and Sean.

Hilmar Berger wrote:
> mapping BAC clones to genomic positions and genes can be a time 
> consuming process, especially if you have to do it manually.  If public 
> databases can help you depends on the way the BAC clones are named. 
> Could you give some example ?
>   
Here are some examples. I was unable to obtain information from the UCSC
table browser (as Sean suggested), although I have to try it more.
CTD-2082H4   
CTD-2060E7   
RP11-130N6   
RP11-142M16   
RP11-221G13   
RP11-238E12   
CTD-2088A19   
GS1-225F6   
RP11-48J15   
RP11-4D2   
RP11-82L3   
RP11-71M14   
RP11-135H9   
RP11-256K9   
RP11-65G9   
RP11-185N10   
RP11-140H23   
RP11-247J14   


> Anyway, usually you should be able to get a table of BAC clones and 
> other parameters (genomic location, (uni)gene id etc.) which might help 
> in identifiying the genes in question.
>
>   

yes, I have that information.
Isn't there a way in Bioconductor to ask for the genes present between
nucleotides 130000 and 145000??

Best,
Federico

>> Estimated colleagues,
>>
>> I am working with CGH data. I have the name of the BAC clones and their
>> chromosome locations. They correspond to OncoBAC arrays (?).
>> Is there any way in bioconductor to determine which genes belong to each
>> BAC clone?
>>