[BioC] Error with arrayQuality

[Seth Falcon]

Shripad Sinari <shripad at email.arizona.edu> writes:

> Hi,
>
> I get the following error when running gpQuality
>
>  > gpQuality()
> [1] "Starting gpQuality..."
> Error in if (skip > 0) readLines(file, skip) :
>     missing value where TRUE/FALSE needed
> In addition: Warning messages:
> 1: input string 30 is invalid in this locale in: grep(pattern, x, 
> ignore.case, extended, value, fixed, useBytes)
> 2: input string 30 is invalid in this locale in: grep(pattern, x, 
> ignore.case, extended, value, fixed, useBytes)
>

Please include sessionInfo() output.  This looks like a locale issue.
Perhaps retry using the "C" locale.

   apropos("locale")

+ seth

-- 
Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center
http://bioconductor.org