[BioC] QCReport problem

Sanchita Bhattacharya SBhattacharya at lbl.gov
Fri Jun 1 20:38:43 CEST 2007


I have a question about running the QCReport funtion in R 2.5. I work with
HTHgu133 arrays ( High throughput arrays) and I was trying to get the
QCReport for those arrays. I uploaded HTHgu133Av2 cdf to run this function.
But still I am getting error which is pasted below:

> QCReport(Data,file="testReport.pdf")
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip
type: hthgu133acdf
Error in plot(qc(object)) : error in evaluating the argument 'x' in
selecting a method for function 'plot

I will appreciate if somebody can help me to debug this problem.



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